Publications

  1. Fu, Y., Jiang, Y.-B., Dunphy, D., Xiong, H., Coker, E., Chou, S., Zhang, H., Vanegas, J. M., Cecchi, J. L., Rempe, S. B., and Brinker, C. J. Ultra-thin, enzymatic, nano-stabilized liquid membrane for CO2 separation. Submitted
  2. Vanegas, J. M., Heinrich, F., Rogers, D. M., Carson, B. D., La Bauve, S., Vernon, B. C., Akgun, B., Satija, S., Zheng, A., Kielian, M., Rempe, S. B., and Kent, M. S. Study of Dengue E insertion into lipid bilayers by neutron reflectivity and molecular dynamics simulations. Submitted
  3. Torres-Sanchez, A., Vanegas, J. M., and Arroyo, M. Geometric derivation of the microscopic stress: A covariant central force decomposition. J. Mech. Phys. Solids 93, 224 – 239 (2016) [PDF]

  4. Torres-Sanchez, A., Vanegas, J. M., and Arroyo, M. Examining the mechanical equilibrium of microscopic stresses in molecular simulations. Phys. Rev. Lett. 114, 258102 (2015). [PDF]

  5. Anishkin, A., Vanegas, J. M., Rogers, D. M., Lorenzi, P. L., Chan, W. K., Purwaha, P., Weinstein, J. N., Sukharev, S., and Rempe, S. B. Catalytic role of the substrate defines specificity of therapeutic L-asparaginase. J. Mol. Biol. 427, (17), 2867–2885 (2015) [PDF]

  6. Vanegas, J. M. and Arroyo, M. Force transduction and lipid binding in MscL: A continuum-molecular approach. PLoS ONE, 9 (12), e113947. (2014) [PDF]

  7. Vanegas, J. M., Torres-Sanchez, A., and Arroyo, M. Importance of force decomposition for local stress calculations in biomembrane molecular simulations. J. Chem. Theory Comput., 10, 691-702. (2014) [PDF]

  8. Vanegas, J. M., Contreras, M. F., Faller, R., and Longo, M. L. Role of unsaturated lipid and ergosterol in ethanol tolerance of model yeast biomembranes. Biophys. J., 102, 507-516. (2012) [PDF]

  9. Vanegas, J. M., Longo, M. L., and Faller, R. Crystalline, ordered and disordered lipid membranes: Convergence of stress profiles due to ergosterol. J. Am. Chem. Soc., 133, 3720-3723. (2011) [PDF]

  10. Vanegas, J. M., Faller, R., and Longo, M. L. Influence of ethanol on lipid/sterol membranes: Phase diagram construction from AFM imaging. Langmuir, 26, 10415-10418. (2010) [PDF]

  11. Goksu, I., Vanegas, J. M., Blanchette, C. D., Lin, W-C., and Longo, M. L. AFM for structure and dynamics of biomembranes. Biochim. Biophys. Acta, 1788, 254-266. (2009) [PDF]